CDS

Accession Number TCMCG021C12930
gbkey CDS
Protein Id XP_010922101.1
Location complement(join(34682380..34682697,34682940..34683026,34684137..34684337,34684449..34684653,34688610..34689454))
Gene LOC105045501
GeneID 105045501
Organism Elaeis guineensis

Protein

Length 551aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA268357
db_source XM_010923799.2
Definition ribonuclease III domain-containing protein RNC1, chloroplastic [Elaeis guineensis]

EGGNOG-MAPPER Annotation

COG_category A
Description Binds specific group II introns in chloroplasts and facilitates their splicing. Acts on both subgroup IIA and subgroup IIB introns. The substrates of the subgroup II also require the CRM domain proteins CAF1 or CAF2. Binds both single-stranded and double-stranded RNA non-specifically, but lacks endonuclease activity. Required for plastid ribosome biogenesis
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE -
KEGG_ko -
EC -
KEGG_Pathway -
GOs GO:0000373        [VIEW IN EMBL-EBI]
GO:0000375        [VIEW IN EMBL-EBI]
GO:0000377        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003725        [VIEW IN EMBL-EBI]
GO:0003727        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004518        [VIEW IN EMBL-EBI]
GO:0004519        [VIEW IN EMBL-EBI]
GO:0004521        [VIEW IN EMBL-EBI]
GO:0004525        [VIEW IN EMBL-EBI]
GO:0004540        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008380        [VIEW IN EMBL-EBI]
GO:0009507        [VIEW IN EMBL-EBI]
GO:0009532        [VIEW IN EMBL-EBI]
GO:0009536        [VIEW IN EMBL-EBI]
GO:0009570        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010033        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010608        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0014070        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016246        [VIEW IN EMBL-EBI]
GO:0016441        [VIEW IN EMBL-EBI]
GO:0016458        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016788        [VIEW IN EMBL-EBI]
GO:0016891        [VIEW IN EMBL-EBI]
GO:0016893        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0022613        [VIEW IN EMBL-EBI]
GO:0030422        [VIEW IN EMBL-EBI]
GO:0031047        [VIEW IN EMBL-EBI]
GO:0031050        [VIEW IN EMBL-EBI]
GO:0031053        [VIEW IN EMBL-EBI]
GO:0031054        [VIEW IN EMBL-EBI]
GO:0032296        [VIEW IN EMBL-EBI]
GO:0034470        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034660        [VIEW IN EMBL-EBI]
GO:0035194        [VIEW IN EMBL-EBI]
GO:0035195        [VIEW IN EMBL-EBI]
GO:0035196        [VIEW IN EMBL-EBI]
GO:0040029        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0042254        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043331        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044434        [VIEW IN EMBL-EBI]
GO:0044435        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070887        [VIEW IN EMBL-EBI]
GO:0070918        [VIEW IN EMBL-EBI]
GO:0071310        [VIEW IN EMBL-EBI]
GO:0071359        [VIEW IN EMBL-EBI]
GO:0071407        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090305        [VIEW IN EMBL-EBI]
GO:0090501        [VIEW IN EMBL-EBI]
GO:0090502        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901698        [VIEW IN EMBL-EBI]
GO:1901699        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGTCTTTCAAGCCCTAATCCGCCCATCTCTCACCAACGACCCCAAATTCCTCTTCTTCTCCTCACCTATGGAGATTTCTTCTCCTCTCAAATCCGATCTCTCCTTCTCCTCCTCCCTCTCTCCTTTCCCTCTCCAAACCCGCCTCAAGGACCCCAAATCCCTCCGCTCCGTCTTCCCCAACACCTCTGTCTTCGCCGTCGCCGTCAACCCCGACCAAGAGGCGCCGGCCGACAGCCCCAAGAGGCTCCTCAAAGAGCTCGCCGAGCGTAAAAAAGTGGCCTTTCCGAAGAAAAAGATTCCTCCGAGGACATTCATACTGAAACCCCCGCTAGATGATGCTAAATTGACCGAGAGATTCCTCAACAGCCCCCAATTGTCCCTAAAGTCGTTTCCTTTGTTGAGTTCTTGCTTGCCGTTCTCCCGGTTGAACAATGCCGACAAGACGTGGATGGACGAGTACCTTCTCGAGGCAAAGCAGGCGCTTGGATATCCCCTGGAGCCGTCCGACCGGTTTGATGACGATAACCCTGCGAAGCAATTTGATACCCTCCTGTACTTGGCGTTTCAGCACCCGTCGTGTGATAGGACCAACGCGAGGCATGTCCGGAATGGGCACTCGAGGCTCTGGTTCTTGGGACAGTATGTGCTCGAGCTGGCGTTTGCCGAATACTTCTTGCAGAGGTACCCGAGGGAGTCACCGGCGCCAATGAGGGAAAGGGTTTATGCGTTAATTGGGAAGGGGAATTTGCCAAAGTGGATCAAAGCTGCGAGCTTGCAGAATTTGGTGTTTCCATTTGATGAGATGGATAAGTTGATCCGGAAGGAGAGAGAGCCACCAGTGAAATCTGTATTCTGGGCATTGTTTGGAGCAATATATCTGTGTTTTGGTATGCCTGAAGTTTACCGCGTTCTATTTGAAGCATTTGGAATGGATCCAGAAGATGAGAGCTGTCAACCAAAATTGAGACGGCAACTGGAAGATGTTGATTATGTTTCCGTTGAGTTCGAAGGCCGCCAGCTTAGCTGGCAAGATGTTGCTGCCTATAAGCCCCCGCAAGATGCACTTTTTGCACATCCAAGGCTTTTTAGAGCATGTGTTCCTCCAGGTATGCATCGTTTTCGAGGGAATATCTGGGACTTTGACAGCAGACCCCAAGTCATGCAAATACTAGGATACCCTTTGCCAATGAATGACAGAATTCCAGAAGTCACAGAAGCAAGGAACATTGAACTTGGACTTGGGTTTCAGTTATGCTTTATGCATCCCTCCAAGTATAAATTTGAGCATCCGCGATTTTGTCTAGAGCGGTTGGAATATGTTGGCCAAAAGATTCAGGATCTTGTTATGGCTGAGAGATTACTCATGAAGCATCTTGATGCACCTGGAAGATGGTTACAAGAGAAGCATCGCCGATTATTAATGAACAAGTACTGCGGACGGTACCTGAGGGACAAGCACCTTCATCGCTTCATCATATATGGAGAGTCAGTCCAAGACAAGTTTGAGCATAATCGTAGGCTCCGGAATCCAGCCACAACTGCAGTCCAACAAGCAATACATGGGCTTGCCTACACAGTCTATGGCAAACCAGATGTCAGGCGCTTGATGTTTGAAGTGTTTGACGTTGAGCAGATCCAACCGAAAGCTGTATGA
Protein:  
MVFQALIRPSLTNDPKFLFFSSPMEISSPLKSDLSFSSSLSPFPLQTRLKDPKSLRSVFPNTSVFAVAVNPDQEAPADSPKRLLKELAERKKVAFPKKKIPPRTFILKPPLDDAKLTERFLNSPQLSLKSFPLLSSCLPFSRLNNADKTWMDEYLLEAKQALGYPLEPSDRFDDDNPAKQFDTLLYLAFQHPSCDRTNARHVRNGHSRLWFLGQYVLELAFAEYFLQRYPRESPAPMRERVYALIGKGNLPKWIKAASLQNLVFPFDEMDKLIRKEREPPVKSVFWALFGAIYLCFGMPEVYRVLFEAFGMDPEDESCQPKLRRQLEDVDYVSVEFEGRQLSWQDVAAYKPPQDALFAHPRLFRACVPPGMHRFRGNIWDFDSRPQVMQILGYPLPMNDRIPEVTEARNIELGLGFQLCFMHPSKYKFEHPRFCLERLEYVGQKIQDLVMAERLLMKHLDAPGRWLQEKHRRLLMNKYCGRYLRDKHLHRFIIYGESVQDKFEHNRRLRNPATTAVQQAIHGLAYTVYGKPDVRRLMFEVFDVEQIQPKAV